Count number of gene lists supporting each gene

For each unique gene or SNP returns the number of lists that gene or SNP is found in.

Usage

lists_per_gene(data)

Arguments

data

Data frame in the format of ARDSMAICR::data_genes

Value

A tibble

Details

Input columns for data_genes should be (this is the standard output of the MAIC algorithm):

• gene - HGNC gene symbol - chr

• 1...

• uID - Study unique identifier. Column contains study specific gene score - dbl

• n...

• maic_score - MAIC score for gene - dbl

• contributors - Studies contributing to MAIC score by method - chr

Examples

if (FALSE) {
if(interactive()){
 ARDSMAICR::data_genes |>
   lists_per_gene() |>
   dplyr::filter(.data$gene == "IL6")
 }
}